Organzing the Tara Oceans data

Readings due before class

Required (Spread over L08 and L09)

• Chapters 12, 13, 15: R for Data (they are short and most of the material is already familiar to you)

• The Bermuda Principles

• Bioconductor

Recommended Reading (Spread over L08 and L09)

• Sunagawa et al. (2015) Structure and function of the global ocean microbiome

You will need to be logged into Western's VPN to access this paper.

• Cook-Deegan and DeGuire (2017) Moving beyond Bermuda

• The MIAME standard and fsubsequent formats for other data types at FGED.

• Massive Analysis and Quality Control (MAQC)

Action items

• Assignment #2 and prepare for Quiz on Thursday (Midterm revisited)